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  • Poster presentation
  • Open Access

Further adventures in shape space

  • 1,
  • 1 and
  • 1
Chemistry Central Journal20082 (Suppl 1) :P41

https://doi.org/10.1186/1752-153X-2-S1-P41

  • Published:

Keywords

  • Optimal Performance
  • Superior Performance
  • Virtual Screening
  • Shape Similarity
  • Active Molecule

It has been a long-held assumption in ligand-based virtual screening that the bioactive conformation of a molecule is privileged. The assumption is that superior performance in 3D searching (pharmacophores, shape similarity) should be obtained when using the bioactive conformation of a query molecule for searching for other active molecules. A parallel assumption has been that extensive sampling of the conformational space of database molecules is necessary to obtain optimal performance for 3D ligand-based screening. Both of these assumptions will be critically assessed for ligand-based virtual screening carried out in shape space.

Authors’ Affiliations

(1)
OpenEye Scientific Software, 9, Bisbee Court, Santa Fe, New Mexico, USA

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