Volume 3 Supplement 1
A new approach to kernel based data analysis algorithms
© Mussa and Glen; licensee BioMed Central Ltd. 2009
Published: 05 June 2009
Kernel based methods (KBMs) [1, 2] are arguably the best data analysis technique currently available [3, 4]. Unlike Neural Networks in which, besides a global minimum, several local minima exist, a Kernel based fitting/classifying problem is a convex optimization problem with a single minimum. However, finding this minimum (and in doing so yielding optimal parameters of a given observational model) in practice requires the manipulation, such as inversion, of large matrices. This has been challenging even when the number of data points is just over a few thousands .
The well established direct methods for updating, or inverting huge matrices fail due to the expense of a large increase in core-memory storage and CPU-time, even for moderately-sized systems. The root of the problem is that direct methods have O(N2) core memory storage requirements and the CPU-time scales as O(N3), where N is the dimension of the matrix (the number of data points, here). Despite the advances in computer power, "conventional" computers can only solve relatively small problems (N ≈ 104 to 105).
Another outstanding drawback of the KBMs is how to choose the appropriate kernel function for a given data set .
In this paper we would like to propose a computationally efficient training scheme for KBMs for obtaining the global minimum. We also present a systematic approach to selecting the appropriate kernel functions. Some preliminary results on chemical data sets will be illustrated.
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