Kinetics and mechanism of jack bean urease inhibition by Hg2+
© Du et al.; licensee Chemistry Central Ltd. 2012
Received: 11 October 2012
Accepted: 30 November 2012
Published: 10 December 2012
Jack bean urease (EC 188.8.131.52) is a metalloenzyme, which catalyzes the hydrolysis of urea to produce ammonia and carbon dioxide. The heavy metal ions are common inhibitors to control the rate of the enzymatic urea hydrolysis, which take the Hg2+ as the representative. Hg2+ affects the enzyme activity causing loss of the biological function of the enzyme, which threatens the survival of many microorganism and plants. However, inhibitory kinetics of urease by the low concentration Hg2+ has not been explored fully. In this study, the inhibitory effect of the low concentration Hg2+ on jack bean urease was investigated in order to elucidate the mechanism of Hg2+ inhibition.
According to the kinetic parameters for the enzyme obtained from Lineweaver–Burk plot, it is shown that the Km is equal to 4.6±0.3 mM and Vm is equal to 29.8±1.7 μmol NH3/min mg. The results show that the inhibition of jack bean urease by Hg2+ at low concentration is a reversible reaction. Equilibrium constants have been determined for Hg2+ binding with the enzyme or the enzyme-substrate complexes (Ki =0.012 μM). The results show that the Hg2+ is a noncompetitive inhibitor. In addition, the kinetics of enzyme inhibition by the low concentration Hg2+ has been studied using the kinetic method of the substrate reaction. The results suggest that the enzyme first reversibly and quickly binds Hg2+ and then undergoes a slow reversible course to inactivation. Furthermore, the rate constant of the forward reactions (k+0) is much larger than the rate constant of the reverse reactions (k-0). By combining with the fact that the enzyme activity is almost completely lost at high concentration, the enzyme is completely inactivated when the Hg2+ concentration is high enough.
These results suggest that Hg2+ has great impacts on the urease activity and the established inhibition kinetics model is suitable.
KeywordsJack bean urease Hg2+ ion Inhibition Kinetics
Urease (urea amidohydrolase, EC 184.108.40.206) is a nickel-containing enzyme that catalyzes the hydrolysis of urea to ammonia and carbon dioxide. The enzyme is widely distributed in nature and is found in a variety of plants, algae, fungi, bacteria and soil [1–3]. Thus, urease plays an important role in the nitrogen metabolism of many microorganism and plants [4, 5]. Despite the great importance of urease in biotechnology and medicine and also continuous interest in many laboratories [6–11], the mechanisms of hydrolysis of the metal active site of the enzyme have not been studied in detail . Study show that the cysteine is involved in the catalysis, as was demonstrated by reacting the enzyme with cysteine-reactive agents [13, 14]. In view of the complexity of the role of the active site flap cysteine in the urease catalysis, effect of potential inhibitors on the reactivity of enzyme thiol groups, the active site flap thiol in particular, was investigated [15, 16].
The main classes of urease inhibitors are: boroncontaining compounds , thiol compounds , phosphate , phosphoroamide compounds , hydroxamic acids , F− ions , and heavy metal ions [19, 20]. Among the known inhibitors of urease, the inhibition of urease by heavy metal ions is said to result from the reaction of these ions with a sulfhydryl group in the active center of the enzyme by a reaction analogous to the formation of metal sulfides . The formation of sulfides with the active center was confirmed experimentally by the correlation between the inhibitory efficiency of metal ions and the solubility products of their sulfides . So, inhibition of urease by heavy metal ions can be studied to investigate the effect on the reactivity of enzyme thiol groups. Moreover, the inhibition of heavy metal ions is related to its biological toxicity, which causing loss of the biological function of the enzyme then affects the growth and survival of the animal and plants [20, 22]. Studies published so far on inhibition of urease of both plant and bacterial origin by heavy metal ions have aimed either at investigating their toxicity or at detection of their trace amounts, e.g. of Hg2+, Cu2+ and Ag+ ions [23–27]. Mercury is a known biotoxicant that can accumulate in the human body and show up in the food chain . However, inhibitory kinetics of urease by low concentration Hg2+ has not been explored fully and only a few studies on the urease inhibition activities of heavy metal ions have appeared in the literature.
In this study, the inhibitory effect of the low concentration Hg2+ on jack bean urease was investigated. Our present investigation not only studied the kinetics of inhibition of the jack bean urease by the low concentration Hg2+ specifically but also researched related inhibition mechanisms. The results show that Hg2+ has great impacts on the jack bean urease activity. The inhibition of jack bean urease by the low concentration Hg2+ is shown to be reversible. In addition, the rate constants of inactivation are determined.
Effect of Hg2+concentration on urease activity
The inhibition mechanism of urease by Hg2+
Determination of the kinetic parameters of urease
The kinetic behavior of jack bean urease in the hydrolysis of urea has been studied specifically. Under the conditions employed in the present study, the hydrolysis of urea by urease follows Michaelis-Menten kinetics. The kinetic parameters for the enzyme have been obtained from Lineweaver–Burk plot (Figure 3, curve 0) with Km (4.6±0.3 mM) and Vm (29.8±1.7 μmol NH3/min mg) which are in agreement with previously obtained values [31, 32].
Kinetics of the substrate reaction in the presence of different concentrations of Hg2+
Microscopic inhibitory rate constants of the jack bean urease in different concentrations [S]
[S] (mg L-1)
Kinetics of the reaction at different substrate concentrations in the presence of Hg2+
Microscopic rate constants of jack bean urease by different concentrations Hg 2+
In this paper, the effects of low concentration Hg2+ on the enzyme activity were studied specifically, the results of which show that the inhibitor concentration leading to 50% of enzyme activity loss, IC50, is estimated to be 0.018±0.001 μM. In addition, kinetics of inhibition of the enzyme by Hg2+ at the low concentration was also studied by the substrate reaction kinetic method described by Tsou . As a result, the kinetic parameters for the enzyme obtained from Lineweaver–Burk plot show that Km is equal to 4.6±0.3 mM and Vm is equal to 29.8±1.7 μmol NH3/min mg, which generally accord with the values reported in literature [31, 32]. When the reaction time is sufficiently long, the concentration of product approaches a constant final value, which decreases as the concentration of Hg2+ increases and is accord with the conclusion in ref.22. The treated enzyme still has partial residual activity at low concentration of Hg2+, which is analyzed by the method described by Tsou  and also suggests that inactivation of urease by the low concentration Hg2+ is a reversible reaction under the experimental conditions , while the formation of the enzyme Hg2+ complex is an irreversible reaction at 1.0 μM Hg2+ because the asymptote tends to parallel to the abscissa without residual enzyme activity . The plots of the remaining enzyme activity against the enzyme concentrations in the presence of Hg2+ with different concentrations give a family of straight lines, all of which pass through the origin, indicating that the inhibition of Hg2+ on the enzyme is reversible . The results suggest that the enzyme first reversibly and quickly binds Hg2+ and then undergoes a slow reversible course to inactivation on the basis of the previous study . Plots of 1/v against 1/[S] at different concentrations of Hg2+ give a family straight line with a common intercept on the 1/[S] axis but with different slopes and intercepts on the 1/v axis, which indicates that Hg2+ is a noncompetitive inhibitor for the enzyme .
In accordance with the microscopic rate constants are determined and shown in Table 1 and Table 2, we can see that the values of k+0 are almost the same (0.279, 0.267, 0.307 min-1) and the values of k-0 are the same (0.036, 0.037, 0.036 min-1) as well. Furthermore, the microscopic rate constants of the forward and the reverse reactions slightly vary with the increasing concentration of the substrate. The results indicate that the presence of substrate does not provide protection for the enzyme against the inhibition by Hg2+. Besides, the rate constant for forward inactivation (k+0) is much larger than that for reverse reactivation (k-0). According to combination with the fact that the enzyme activity is almost completely lost when the concentration of Hg2+ reaches 0.08 μM, the enzyme is completely inactivated when the concentration of Hg2+ is high enough. The results suggest that Hg2+ has great impacts on the urease activity. Based on the fact that thiols are involved in binding Hg that was provided in the previous study, there is another demonstration that sulfhydryl group is essential for the activity of the enzyme.
Jack bean urease, Fluka, with specific activity 57 μmol NH3/min mg protein was used (without further purified). Urea (substrate), mercuric chloride (inhibitor) and other reagents are local products of analytical grade. The water used was redistilled and ion-free.
The standard residual activity assay mixture (1.0 ml) contained 0.67 mM urea in 0.02 M KH2PO4-K2HPO4 buffer (pH 7.4). Urease was incubated by Hg2+ for 15 min. Reactions were initiated by the addition of small aliquots of the enzyme and Hg2+ mixed solution, typically 3 μl containing 2 mg ml-1 enzyme. After reaction for 15 at 25°C, 2 ml phenol solution and 3 ml hypochlorite sodium solution were added into the mixture at 35°C.
Progress curves of the enzyme reactions were obtained by measuring the ammonia generated as a function of reaction time. The assay mixture (1.0 ml) typically contained 20-50 mg L-1 urea in 0.02 M KH2PO4-K2HPO4 buffer (pH 7.4), 0.005–0.025 μM Hg2+ and 6 μg ml-1 urease. Reactions were initiated by adding urease to the mixture of urea and Hg2+. After reaction for some time at 25°C, 2 ml phenol solution and 3 ml hypochlorite sodium solution were added into the mixture at 35°C.
The reaction was monitored by measuring the ammonia concentration by the phenol-hypochlorite method  in samples, which were removed from the reaction mixtures at time intervals. Absorption at 625 nm was recorded using a spectrophotometer. One unit (U) of enzymatic activity was defined as the amount of enzyme required to produce 1μM ammonia per min under these conditions. The activity of uninhibited urease was accounted as the control activity of 100%.
Determination of microscopic rate constants
The progress-of-substrate-reaction method that previously described by Tsou  was used to study the inhibitory kinetics of jack bean urease by Hg2+. The substrate reaction progress curve was analyzed to obtain the reaction rate constants as detailed below. The reaction was carried out at a constant temperature of 25°C.
where [P]calc is the product concentration to be expected from the straight-line portions of the curves as calculated from Eq. (4) and [P] t is the product concentration actually observed at time t. Plots of ln([P]calc-[P] t ) versus t give a series of straight lines at different concentrations of inhibitor ([Hg]) with slopes of –A. The apparent forward rate constant A can be obtained from such graphs. From Eq. (4), a plot of [P]calc against time, t, gives a straight line with a slope of vk-0/A. From the slope of the straight line, k-0 can be obtained.
Plot of 1/(A-k-0) versus 1/[Hg] gives a straight line with a slope of Ki/ k+0 and an intercept of 1/k+0 on the ordinate and -1/Ki on the abscissa which can be used to determine the microscopicrate constant, k+0, and the equilibrium constant for the inhibitor binding, Ki.
The inhibitory effect of Hg2+ on jack bean urease was investigated that the Hg2+ displayed strong inhibitory activity against jack bean urease. The experiment result shows that the inhibition of urease by low concentration Hg2+ is a reversible reaction and the inhibition belongs to be noncompetitive. The microscopic rate constants of the forward and the reverse reactions vary little with increasing substrate concentration, indicating that presence of substrate does not offer protection of this enzyme against inhibition by Hg2+. The data fit well to model, which indicates that the established inhibition kinetics model is suitable.
This work was financially supported by the Nature Science Foundation of China (20971024), the International Sea Area Resources Survey and Development of the 12th Five-year Plan of China (DY125-15-E-01) and the Higher Education Institutions Key Nature Science Foundation of Anhui (kj2009A127).
- Karplus PA, Pearson MA, Hausinger RP: 70 Years of Crystalline Urease: What Have We Learned?. Acc Chem Res. 1997, 30: 330-337. 10.1021/ar960022j.View ArticleGoogle Scholar
- Krajewska B: Ureases I. Functional, catalytic and kinetic properties: A review. J Mol Catal B: Enzym. 2009, 59: 9-21. 10.1016/j.molcatb.2009.01.003.View ArticleGoogle Scholar
- Das N, Kayastha AM, Srivastava PK: Purification and characterization of urease from dehusked pigeonpea (Cajanus cajan L.) seeds. Phytochem. 2002, 61: 513-521. 10.1016/S0031-9422(02)00270-4.View ArticleGoogle Scholar
- Dong XW, Li YG, Li ZW, Cui YM, Zhu HL: Synthesis, structures and urease inhibition studies of copper(II) and nickel(II) complexes with bidentate N, O-donor Schiff base ligands. J Inorg Biochem. 2012, 108: 22-29.View ArticleGoogle Scholar
- Murafuji T, Azuma T, Miyoshi Y, Ishibashi M, Mustafizur Rahman AFM, Migita K, Sugihara Y, Mikata Y: Inhibition of jack bean urease by organobismuth compounds. Bioorg Med Chem Lett. 2006, 16: 1510-1513. 10.1016/j.bmcl.2005.12.034.View ArticleGoogle Scholar
- You ZL, Shi DH, Zhang JC, Ma Y, Wang C, Li K: Synthesis, structures, and urease inhibitory activities of oxovanadium(V) complexes with Schiff bases. Inorg Chim Acta. 2012, 384: 54-61.View ArticleGoogle Scholar
- Benini S, Rypniewski WR, Wilson KS, Mangani S, Ciurli S: Molecular details of urease inhibition by boric acid:insights into the catalytic mechanism. J Am Chem Soc. 2004, 126: 3714-3715. 10.1021/ja049618p.View ArticleGoogle Scholar
- Mao WJ, Lv PC, Shi L, Li HQ, Zhu HL: Synthesis, molecular docking and biological evaluation of metronidazole derivatives as potent Helicobacter pylori urease inhibitors. Bioorg Med Chem. 2009, 17: 7531-7536. 10.1016/j.bmc.2009.09.018.View ArticleGoogle Scholar
- You ZL, Lu Y, Zhang N, Ding BW, Sun H, Hou P, Wang C: Preparation and structural characterization of hetero-dinuclear Schiff base copper(II)-zinc(II) complexes and their inhibition studies on Helicobacter pylori urease. Polyhedron. 2011, 30: 2186-2194. 10.1016/j.poly.2011.05.048.View ArticleGoogle Scholar
- Mari AJ, Domi N, Carmen SN, Mari AF, Juan AP, Sara SF, Oscar U, Fabrice H, Jose M, Garci AM: Design, synthesis, and biological evaluation of phosphoramide derivatives as urease inhibitors. J Agric Food Chem. 2008, 56: 3721-3731. 10.1021/jf072901y.View ArticleGoogle Scholar
- Cheng K, Zheng QZ, Zhu HL: Syntheses, structures and urease inhibitory activities of mononuclear cobalt(II) and 1D cobalt(II) complexes with ligands derived from 3-formylsalicylic acid. Inorg Chem Commun. 2009, 12: 1116-1119. 10.1016/j.inoche.2009.09.001.View ArticleGoogle Scholar
- Krajewska B, Eldik RV, Brindell M: Temperature- and pressure-dependent stopped-flow kinetic studies of jack-bean urease. Implications for the catalytic mechanism. J Biol Inorg Chem. 2012, 17: 1123-1134. 10.1007/s00775-012-0926-8.View ArticleGoogle Scholar
- Krajewska B, Zaborska W: Double mode of inhibition-inducing interactions of 1,4-naphthoquinone with urease: arylation versus oxidation of enzyme thiols. Bioorgan Med Chem. 2007, 15: 4144-4151. 10.1016/j.bmc.2007.03.071.View ArticleGoogle Scholar
- Krajewska B, Zaborska W: Jack bean urease: The effect of active-site binding inhibitors on the reactivity of enzyme thiol groups. Bioorg Chem. 2007, 35: 355-365. 10.1016/j.bioorg.2007.02.002.View ArticleGoogle Scholar
- Zaborska W, Krajewska B, Kot M, Karcz W: Quinone-induced inhibition of urease: Elucidation of its mechanisms by probing thiol groups of the enzyme. Bioorg Chem. 2007, 35: 233-242. 10.1016/j.bioorg.2006.11.001.View ArticleGoogle Scholar
- Krajewska B, Ciurli S: Jack bean (Canavalia ensiformis) urease. Probing acid–base groups of the active site by pH variation. Plant Physiol and Bioch. 2005, 43: 651-658. 10.1016/j.plaphy.2005.05.009.View ArticleGoogle Scholar
- Benini S, Rypniewski WR, Wilson KS, Miletti S, Ciurli S, Mangani S: A new proposal for urease mechanism based on the crystal structures of the native and inhibited enzyme from Bacillus pasteurii: Why urea hydrolysis costs two nickels. Structure. 1999, 7: 205-216. 10.1016/S0969-2126(99)80026-4.View ArticleGoogle Scholar
- Tarun EI, Rubinov DB, Metelitza DI: Inhibition of urease by cyclic b-triketones and fluoride ions. Appl Biochem Micro. 2004, 40: 337-344.View ArticleGoogle Scholar
- Behbehani GR, Saboury AA, Taherkhani A, Barzegar L, Mollaagazade A: A thermodynamic study on the binding of mercury and silver ions to urease. J Therm Anal Calorim. 2011, 105: 1081-1085. 10.1007/s10973-011-1729-9.View ArticleGoogle Scholar
- Krajewska B: Mono-(Ag, Hg) and di-(Cu, Hg) valent metal ions effects on the activity of jack bean urease, Probing the modes of metal binding to the enzyme. J Enzyme Inhib Med Chem. 2008, 23: 535-542. 10.1080/14756360701743051.View ArticleGoogle Scholar
- Takishima K, Suga T, Mamiya G: The structure of jack bean urease. The complete amino acid sequence, limited proteolysis and reactive cysteine residues. Eur J Biochem. 1988, 175: 151-165. 10.1111/j.1432-1033.1988.tb14177.x.View ArticleGoogle Scholar
- Krajewska B, Zaborska W, Chudy M: Multi-step analysis of Hg2+ ion inhibition of jack bean urease. J Inorg Biochem. 2004, 98: 1160-1168. 10.1016/j.jinorgbio.2004.03.014.View ArticleGoogle Scholar
- Chen JL, Zheng AF, Chen AH, Gao YC, He CY, Kai XM, Wu GH, Chen Y: A functionalized gold nanoparticles and rhodamine 6G based bluorescent sensor for high sensitive and selective detection of mercury(II) in environmental water samples. Anal Chim Acta. 2007, 599: 134-142. 10.1016/j.aca.2007.07.074.View ArticleGoogle Scholar
- Shi R, Stein K, Schwedt G: Determination of mercury(II) traces in drinking water by inhibition of an urease reactor in a flow injection analysis (FIA) system. Fresenius J Anal Chem. 1997, 357: 752-755. 10.1007/s002160050243.View ArticleGoogle Scholar
- Preininger C: The enzymatic determination of mercury and copper using acid urease, The effects of buffers. Mikrochim Acta. 1999, 130: 209-214. 10.1007/BF01244930.View ArticleGoogle Scholar
- Prakasha O, Talat M, Hasan SH: Response surface design for the optimization of enzymatic detection of mercury in aqueous solution using immobilized urease from vegetable waste. J Mol Catal B Enzym. 2009, 56: 265-271. 10.1016/j.molcatb.2008.05.015.View ArticleGoogle Scholar
- Pal P, Bhattacharyay D, Mukhopadhyay A, Sarkar P: The detection of mercury, cadium, and arsenic by the deactivation of urease on rhodinized carbon. Environ Eng Sci. 2009, 26: 25-32. 10.1089/ees.2007.0148.View ArticleGoogle Scholar
- Lin JC, Xie XL, Gong M, Wang Q, Chen QX: Effects of mercuric ion on the conformation and activity of Penaeus Vannameiβ-N-acetyl-d-glucosaminidase. Int J Biol Macromol. 2005, 36: 327-330. 10.1016/j.ijbiomac.2005.06.012.View ArticleGoogle Scholar
- Huang XH, Chen QX, Wang Q, Song KK, Wang J, Sha L, Guan X: Inhibition of the activity of mushroom tyrosinase by alkylbenzoic acids. Food Chem. 2006, 94: 1-6. 10.1016/j.foodchem.2004.09.008.View ArticleGoogle Scholar
- Zhan RQ, Chen QX, Zhen WZ, Lin JY, Zhuang ZL, Zhou HM: Inhibition kinetics of green crab (Scylla serrata ) alkaline phosphatase activity by dithiothreitol or 2-mercaptoethanol. Int J Biochem Cell B. 2000, 32: 865-872. 10.1016/S1357-2725(00)00030-3.View ArticleGoogle Scholar
- Krajewska B, Zaborska W: The effect of phosphate buffer in the range of pH 5.80–8.07 on jack bean urease activity. J Mol Cata B Enzym. 1999, 6: 75-81. 10.1016/S1381-1177(98)00129-5.View ArticleGoogle Scholar
- Zaborska W, Krajewska B, Leszko M, Olech Z: Inhibition of urease by Ni2+ ions Analysis of reaction progress curves. J Mol Cata B Enzym. 2001, 13: 103-108. 10.1016/S1381-1177(00)00234-4.View ArticleGoogle Scholar
- Tsou CL: Kinetics of substrate reaction during irreversible modification of enzyme activity. Adv Enzymol Relat Areas Mol Biol. 1988, 61: 381-436.Google Scholar
- Sequeira M, Diamond D, Daridon A, Lichtenberg J, Verpoorte S, Rooij NF: Progress in the realisation of an autonomous environmental monitoring device for ammonia. Trends in Anal Chem. 2002, 21: 816-827. 10.1016/S0165-9936(02)01205-0.View ArticleGoogle Scholar
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